Transcript: ENSDART00000087978.6 ctdspl2a-201

Description

CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2a [Source:ZFIN;Acc:ZDB-GENE-061013-647]

Location

About this transcript

This transcript has 13 exons, is annotated with 19 domains and features, is associated with 724 variant alleles and maps to 171 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000087978.6	ctdspl2a-201	2531	469aa	ENSDARP00000082411.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q08BB5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000132698.2	ctdspl2a-202	478	143aa	ENSDARP00000120642.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 13, Coding exons: 12, Transcript length: 2,531 bps, Translation length: 469 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q08BB5

Version

ENSDART00000087978.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.