Transcript: ENSDART00000085971.5 nphs1-201

Description

NPHS1 adhesion molecule, nephrin [Source:NCBI gene (formerly Entrezgene);Acc:692352]

Location

Chromosome 15: 36,556,503-36,727,462 reverse strand.

About this transcript

This transcript has 29 exons, is annotated with 75 domains and features, is associated with 2451 variant alleles and maps to 124 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000060758.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000186548.1	nphs1-203	7238	1287aa	ENSDARP00000156407.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000085971.5	nphs1-201	3775	1242aa	ENSDARP00000080406.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M9QPY5	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000150109.3	nphs1-202	3381	1115aa	ENSDARP00000124320.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 29, Coding exons: 29, Transcript length: 3,775 bps, Translation length: 1,242 residues

Version

ENSDART00000085971.5

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Transcript: ENSDART00000085971.5 nphs1-201

Summary

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Transcript: ENSDART00000085971.5 nphs1-201

Summary

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