Transcript: ENSDART00000085764.7 plod3-201

Description

procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 [Source:ZFIN;Acc:ZDB-GENE-021031-4]

Gene Synonyms

cb479, cb816, diw, diwanka, fb72h05, im:6912725, lh3, wu:fb72f10, wu:fb72h05

Location

About this transcript

This transcript has 19 exons, is annotated with 18 domains and features, is associated with 699 variant alleles and maps to 148 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000085764.7	plod3-201	2538	730aa	ENSDARP00000080199.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A3KNH4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000136839.3	plod3-202	833	185aa	ENSDARP00000124969.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000149181.3	plod3-204	836	58aa	ENSDARP00000123997.1	Nonsense mediated decay	-	-
ENSDART00000149883.2	plod3-205	759	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000138037.3	plod3-203	763	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 19, Coding exons: 19, Transcript length: 2,538 bps, Translation length: 730 residues

Version

ENSDART00000085764.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.