Transcript: ENSDART00000085219.5 lmo4a-201

Description

LIM domain only 4a [Source:ZFIN;Acc:ZDB-GENE-010702-1]

Gene Synonyms

NH13, id:ibd2576, id:ibd5151, lmo4

Location

About this transcript

This transcript has 5 exons, is annotated with 18 domains and features, is associated with 674 variant alleles and maps to 167 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000085219.5	lmo4a-201	1895	167aa	ENSDARP00000079654.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8QG63	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000192397.1	lmo4a-204	501	167aa	ENSDARP00000147813.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8QG63	-
ENSDART00000142875.2	lmo4a-202	615	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000145020.2	lmo4a-203	538	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 1,895 bps, Translation length: 167 residues

Version

ENSDART00000085219.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.