Transcript: ENSDART00000084841.6 tmprss13b-202

Description

transmembrane serine protease 13b [Source:ZFIN;Acc:ZDB-GENE-090309-2]

Gene Synonyms

si:ch211-139a5.12

Location

Chromosome 5: 37,888,114-37,900,395 reverse strand.

About this transcript

This transcript has 13 exons, is annotated with 21 domains and features, is associated with 399 variant alleles and maps to 369 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000077573.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000084839.7	tmprss13b-201	1790	475aa	ENSDARP00000079274.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A5PF55	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000084841.6	tmprss13b-202	1813	474aa	ENSDARP00000079276.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7EYC5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000133437.3	tmprss13b-203	1004	282aa	ENSDARP00000117188.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0A0MPS1	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000136298.3	tmprss13b-204	547	127aa	ENSDARP00000133251.1	Nonsense mediated decay	A0A0R4IIT3	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 1,813 bps, Translation length: 474 residues

Version

ENSDART00000084841.6

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Transcript: ENSDART00000084841.6 tmprss13b-202

Summary

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Transcript: ENSDART00000084841.6 tmprss13b-202

Summary

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