Transcript: ENSDART00000084448.5 psmd11a-201

Description

proteasome 26S subunit, non-ATPase 11a [Source:ZFIN;Acc:ZDB-GENE-030131-2711]

Gene Synonyms

im:7148232, wu:fb44g10, wu:fc16c05

Location

Chromosome 3: 34,803,948-34,816,893 reverse strand.

About this transcript

This transcript has 13 exons, is annotated with 12 domains and features, is associated with 339 variant alleles and maps to 145 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000060150.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000154696.3	psmd11a-204	4900	421aa	ENSDARP00000129353.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6P3G4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000084448.5	psmd11a-201	2015	421aa	ENSDARP00000078883.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6P3G4	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000151537.2	psmd11a-203	734	34aa	ENSDARP00000125950.1	Nonsense mediated decay	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000151449.2	psmd11a-202	832	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 13, Coding exons: 12, Transcript length: 2,015 bps, Translation length: 421 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: F6P3G4

Version

ENSDART00000084448.5

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000084448.5 psmd11a-201

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Transcript: ENSDART00000084448.5 psmd11a-201

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