Transcript: ENSDART00000084381.5 sybu-201

Description

syntabulin (syntaxin-interacting) [Source:ZFIN;Acc:ZDB-GENE-060929-1202]

Gene Synonyms

fi06c06, tkk, tokkaebi, wu:fi06c06, zgc:153017

Location

Chromosome 16: 39,146,809-39,167,500 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 13 domains and features, is associated with 278 variant alleles and maps to 165 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000060112.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000084381.5	sybu-201	2845	628aa	ENSDARP00000078816.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000121756.3	sybu-202	4573	628aa	ENSDARP00000107450.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000122081.4	sybu-203	3480	506aa	ENSDARP00000104835.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3KVM2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000145364.2	sybu-204	781	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 9, Coding exons: 7, Transcript length: 2,845 bps, Translation length: 628 residues

Version

ENSDART00000084381.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

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Transcript: ENSDART00000084381.5 sybu-201

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Transcript: ENSDART00000084381.5 sybu-201

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