Transcript: ENSDART00000084135.6 ubtd1a-202

Description

ubiquitin domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-070424-93]

Gene Synonyms

ubtd1, zgc:162907

Location

About this transcript

This transcript has 3 exons, is annotated with 13 domains and features, is associated with 112 variant alleles and maps to 58 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000026692.10	ubtd1a-201	1974	221aa	ENSDARP00000015928.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4QP57	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000084135.6	ubtd1a-202	940	230aa	ENSDARP00000078570.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8A4E9	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 940 bps, Translation length: 230 residues

Version

ENSDART00000084135.6

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.