Transcript: ENSDART00000083820.5 vps16-201

Description

VPS16 core subunit of CORVET and HOPS complexes [Source:ZFIN;Acc:ZDB-GENE-050809-9]

Gene Synonyms

im:6907749, wu:fc34a07, wu:fl62a06, zgc:162584

Location

About this transcript

This transcript has 22 exons, is annotated with 8 domains and features, is associated with 1066 variant alleles and maps to 360 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000083820.5	vps16-201	3293	835aa	ENSDARP00000078255.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A5D6T0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000151402.2	vps16-202	735	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 22, Coding exons: 22, Transcript length: 3,293 bps, Translation length: 835 residues

Version

ENSDART00000083820.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.