Transcript: ENSDART00000083431.7 cpt1aa-201

Description

carnitine palmitoyltransferase 1Aa (liver) [Source:ZFIN;Acc:ZDB-GENE-060503-925]

Gene Synonyms

cpt1a, si:dkey-56p7.8

Location

Chromosome 7: 48,806,420-48,829,268 forward strand.

About this transcript

This transcript has 18 exons, is annotated with 15 domains and features, is associated with 687 variant alleles and maps to 236 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000059770.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000083431.7	cpt1aa-201	2325	774aa	ENSDARP00000077866.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1L1U0X8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000145375.5	cpt1aa-202	3354	773aa	ENSDARP00000123315.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1MTA9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000166543.2	cpt1aa-204	2574	773aa	ENSDARP00000135938.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1MTA9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000148744.2	cpt1aa-203	440	7aa	ENSDARP00000124891.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0U1RNE4	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 18, Coding exons: 18, Transcript length: 2,325 bps, Translation length: 774 residues

Version

ENSDART00000083431.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

RNA-Seq supported partial [Definitions]

Transcript: ENSDART00000083431.7 cpt1aa-201

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Transcript: ENSDART00000083431.7 cpt1aa-201

Summary

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