Transcript: ENSDART00000083074.6 C5H2orf42-202

Description

si:ch211-127d4.3 [Source:ZFIN;Acc:ZDB-GENE-060526-22]

Location

Chromosome 5: 56,927,703-56,948,058 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 7 domains and features, is associated with 505 variant alleles and maps to 90 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000059636.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000083074.6	C5H2orf42-202	2304	644aa	ENSDARP00000077509.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M9PZ41	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000191028.1	C5H2orf42-203	2187	605aa	ENSDARP00000152341.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M9PZB1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000146991.2	C5H2orf42-201	1173	391aa	ENSDARP00000117971.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 9, Coding exons: 8, Transcript length: 2,304 bps, Translation length: 644 residues

Version

ENSDART00000083074.6

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Transcript: ENSDART00000083074.6 C5H2orf42-202

Summary

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Transcript: ENSDART00000083074.6 C5H2orf42-202

Summary

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