Transcript: ENSDART00000083070.4 thumpd3-201

Description

THUMP domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-030131-9745]

Gene Synonyms

cb255, sb:cb255, zgc:163086

Location

Chromosome 6: 21,993,613-22,022,636 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 16 domains and features, is associated with 671 variant alleles and maps to 177 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000059634.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000147507.3	thumpd3-202	2258	482aa	ENSDARP00000115829.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QJ61	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000160750.2	thumpd3-203	1619	482aa	ENSDARP00000137475.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QJ61	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000083070.4	thumpd3-201	1619	477aa	ENSDARP00000077505.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

Summary

Statistics

Exons: 11, Coding exons: 9, Transcript length: 1,619 bps, Translation length: 477 residues

Version

ENSDART00000083070.4

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

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Transcript: ENSDART00000083070.4 thumpd3-201

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Transcript: ENSDART00000083070.4 thumpd3-201

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