Transcript: ENSDART00000082473.6 hoxc3a-201

Description

homeobox C3a [Source:ZFIN;Acc:ZDB-GENE-980526-532]

Gene Synonyms

HOX-114, hox[zf-114], zgc:110503

Location

Chromosome 23: 36,144,487-36,149,371 forward strand.

About this transcript

This transcript has 2 exons, is annotated with 11 domains and features, is associated with 113 variant alleles and maps to 417 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000070339.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000154825.3	hoxc3a-204	1027	257aa	ENSDARP00000129398.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000082473.6	hoxc3a-201	2836	250aa	ENSDARP00000076908.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000184448.1	hoxc3a-205	1697	250aa	ENSDARP00000154659.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000128533.4	hoxc3a-202	520	134aa	ENSDARP00000129026.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000137507.2	hoxc3a-203	737	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 2,836 bps, Translation length: 250 residues

Version

ENSDART00000082473.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

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Transcript: ENSDART00000082473.6 hoxc3a-201

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Transcript: ENSDART00000082473.6 hoxc3a-201

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