Transcript: ENSDART00000082359.5 hoxd3a-201

Description

homeobox D3a [Source:ZFIN;Acc:ZDB-GENE-990415-120]

Gene Synonyms

Z-56, hoxd3, im:7144208

Location

Chromosome 9: 1,937,052-1,959,917 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 23 domains and features, is associated with 410 variant alleles and maps to 216 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000059280.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000146131.2	hoxd3a-203	1970	396aa	ENSDARP00000120633.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M9PRW4 O42370	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000082359.5	hoxd3a-201	2567	396aa	ENSDARP00000093704.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M9PRW4 O42370	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000190712.1	hoxd3a-204	1919	396aa	ENSDARP00000156094.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M9PRW4 O42370	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000138730.2	hoxd3a-202	480	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 4, Coding exons: 2, Transcript length: 2,567 bps, Translation length: 396 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O42370

Version

ENSDART00000082359.5

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Upcoming Ensembl Platform Transition

Transcript: ENSDART00000082359.5 hoxd3a-201

Summary

About Us

Get help

Our sister sites

Follow us

Upcoming Ensembl Platform Transition

Favourite species

All species

Recent locations

Transcript: ENSDART00000082359.5 hoxd3a-201

Summary

About Us

Get help

Our sister sites

Follow us