Transcript: ENSDART00000082319.5 tmem54a-201

Description

transmembrane protein 54a [Source:ZFIN;Acc:ZDB-GENE-040426-1304]

Location

About this transcript

This transcript has 6 exons, is annotated with 22 domains and features, is associated with 258 variant alleles and maps to 133 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000082319.5	tmem54a-201	1321	240aa	ENSDARP00000076755.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000157309.3	tmem54a-204	919	252aa	ENSDARP00000128125.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WD28	-
ENSDART00000155722.2	tmem54a-202	774	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000157006.2	tmem54a-203	360	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 1,321 bps, Translation length: 240 residues

Version

ENSDART00000082319.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.