Transcript: ENSDART00000082315.5 arfip2a-201

Description

ADP-ribosylation factor interacting protein 2a [Source:ZFIN;Acc:ZDB-GENE-041010-221]

Gene Synonyms

fj35g06, wu:fj35g06, zgc:92579

Location

Chromosome 15: 32,249,087-32,267,147 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 14 domains and features, is associated with 534 variant alleles and maps to 158 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000059244.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000082315.5	arfip2a-201	2221	391aa	ENSDARP00000076751.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5XIZ7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000133867.4	arfip2a-202	2189	370aa	ENSDARP00000123682.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QJ24	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000152545.3	arfip2a-206	885	234aa	ENSDARP00000126912.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000152513.3	arfip2a-205	855	241aa	ENSDARP00000126869.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000152139.2	arfip2a-203	464	133aa	ENSDARP00000126739.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000152300.2	arfip2a-204	539	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 2,221 bps, Translation length: 391 residues

Version

ENSDART00000082315.5

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

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Transcript: ENSDART00000082315.5 arfip2a-201

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Transcript: ENSDART00000082315.5 arfip2a-201

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