Transcript: ENSDART00000082295.6 zgc:113274-201

Description

zgc:113274 [Source:ZFIN;Acc:ZDB-GENE-050508-2]

Location

About this transcript

This transcript has 6 exons, is annotated with 1 domain and feature, is associated with 604 variant alleles and maps to 158 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000162434.2	zgc:113274-203	1801	203aa	ENSDARP00000134533.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QVH6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000132627.3	zgc:113274-202	671	135aa	ENSDARP00000115677.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000082295.6	zgc:113274-201	1460	203aa	ENSDARP00000076732.4	Nonsense mediated decay	F1QVH6	-

Summary

Statistics

Exons: 6, Coding exons: 3, Transcript length: 1,460 bps, Translation length: 203 residues

Version

ENSDART00000082295.6

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.