Transcript: ENSDART00000081690.6 si:ch73-27e22.1-201

Description

si:ch73-27e22.1 [Source:ZFIN;Acc:ZDB-GENE-081031-107]

Location

Chromosome 22: 8,583,873-8,594,846 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 28 domains and features, is associated with 121 variant alleles and maps to 144 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000111423.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000081690.6	si:ch73-27e22.1-201	2461	497aa	ENSDARP00000076129.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RA86	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000189873.1	si:ch73-27e22.1-202	6683	478aa	ENSDARP00000148849.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000191236.1	si:ch73-27e22.1-203	5998	176aa	ENSDARP00000145146.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000192241.1	si:ch73-27e22.1-204	1135	242aa	ENSDARP00000149829.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 2,461 bps, Translation length: 497 residues

Version

ENSDART00000081690.6

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000081690.6 si:ch73-27e22.1-201

Summary

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Transcript: ENSDART00000081690.6 si:ch73-27e22.1-201

Summary

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