Transcript: ENSDART00000080744.8 svopl-201

Description

SVOP-like [Source:ZFIN;Acc:ZDB-GENE-041114-109]

Gene Synonyms

zgc:101741

Location

Chromosome 4: 9,769,050-9,781,132 reverse strand.

About this transcript

This transcript has 17 exons, is annotated with 46 domains and features, is associated with 622 variant alleles and maps to 210 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000057983.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000080744.8	svopl-201	2087	506aa	ENSDARP00000075190.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M9QB66 Q1LVS8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000150664.3	svopl-205	2051	506aa	ENSDARP00000125241.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M9QB66 Q1LVS8	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000150304.3	svopl-203	892	211aa	ENSDARP00000125270.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000134280.3	svopl-202	793	145aa	ENSDARP00000125582.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000150589.2	svopl-204	545	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 17, Coding exons: 15, Transcript length: 2,087 bps, Translation length: 506 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q1LVS8

Version

ENSDART00000080744.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

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Transcript: ENSDART00000080744.8 svopl-201

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Transcript: ENSDART00000080744.8 svopl-201

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