Transcript: ENSDART00000080481.6 rxraa-201

Description

retinoid X receptor, alpha a [Source:ZFIN;Acc:ZDB-GENE-070314-2]

Gene Synonyms

NR2B1-B, RXRalpha-B

Location

About this transcript

This transcript has 9 exons, is annotated with 39 domains and features, is associated with 1783 variant alleles and maps to 127 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000080481.6	rxraa-201	1380	458aa	ENSDARP00000074930.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q4V9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000141380.3	rxraa-203	878	232aa	ENSDARP00000122034.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000138152.2	rxraa-202	658	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,380 bps, Translation length: 458 residues

Version

ENSDART00000080481.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.