Transcript: ENSDART00000080423.6 ctsd-201

Description

cathepsin D [Source:NCBI gene (formerly Entrezgene);Acc:65225]

Gene Synonyms

catD, wu:fb93e11, wu:fj17b09

Location

About this transcript

This transcript has 9 exons, is annotated with 25 domains and features, is associated with 583 variant alleles and maps to 288 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000080423.6	ctsd-201	1784	398aa	ENSDARP00000074872.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8AWD9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000148584.2	ctsd-202	799	145aa	ENSDARP00000124482.1	Nonsense mediated decay	-	-
ENSDART00000149598.2	ctsd-203	635	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,784 bps, Translation length: 398 residues

Version

ENSDART00000080423.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.