Transcript: ENSDART00000080413.7 SRSF1-204

Description

serine and arginine rich splicing factor 1a [Source:ZFIN;Acc:ZDB-GENE-040426-1950]

Location

About this transcript

This transcript has 5 exons, is annotated with 20 domains and features, is associated with 293 variant alleles and maps to 291 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000080413.7	SRSF1-204	2171	257aa	ENSDARP00000074862.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7SXP4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000133755.2	SRSF1-203	770	193aa	ENSDARP00000115420.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000135658.2	SRSF1-201	543	116aa	ENSDARP00000113721.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000137058.2	SRSF1-202	643	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 2,171 bps, Translation length: 257 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q7SXP4

Version

ENSDART00000080413.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.