Transcript: ENSDART00000080408.7 ical1-201

Description

islet cell autoantigen 1-like [Source:ZFIN;Acc:ZDB-GENE-030910-4]

Gene Synonyms

cb781, ica, wu:fi39e04

Location

Chromosome 6: 12,870,744-12,900,154 reverse strand.

About this transcript

This transcript has 17 exons, is annotated with 17 domains and features, is associated with 698 variant alleles and maps to 187 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000057688.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000080408.7	ical1-201	2486	569aa	ENSDARP00000074858.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QC36	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000164640.2	ical1-203	2203	572aa	ENSDARP00000133606.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000172237.2	ical1-204	2070	572aa	ENSDARP00000130632.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000150887.2	ical1-202	467	127aa	ENSDARP00000126127.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 17, Coding exons: 14, Transcript length: 2,486 bps, Translation length: 569 residues

Version

ENSDART00000080408.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

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Transcript: ENSDART00000080408.7 ical1-201

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Transcript: ENSDART00000080408.7 ical1-201

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