Transcript: ENSDART00000080348.7 brd2a-202

Description

bromodomain containing 2a [Source:ZFIN;Acc:ZDB-GENE-990415-248]

Gene Synonyms

brd2, fe47f02, fi85h05, ring3, wu:fe47f02, wu:fi85h05

Location

Chromosome 19: 7,152,966-7,158,239 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 12 domains and features, is associated with 309 variant alleles and maps to 67 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000022280.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000035967.8	brd2a-201	4000	836aa	ENSDARP00000038787.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8CYR1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000160894.2	brd2a-205	3031	832aa	ENSDARP00000139243.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1LWX7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000080348.7	brd2a-202	593	137aa	ENSDARP00000125986.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I3ISU1	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000152077.2	brd2a-204	1199	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000139402.2	brd2a-203	649	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 593 bps, Translation length: 137 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000080348.7

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000080348.7 brd2a-202

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Transcript: ENSDART00000080348.7 brd2a-202

Summary

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