Transcript: ENSDART00000079201.6 sp8b-201

Description

sp8 transcription factor b [Source:ZFIN;Acc:ZDB-GENE-030131-3654]

Gene Synonyms

fc48e06, sp8l, wu:fc48e06, zgc:77258

Location

Chromosome 16: 19,536,639-19,538,772 forward strand.

About this transcript

This transcript has 2 exons, is annotated with 30 domains and features, is associated with 106 variant alleles and maps to 400 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000056666.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000079201.6	sp8b-201	1765	455aa	ENSDARP00000073657.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q3L0W2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000112894.3	sp8b-202	2045	437aa	ENSDARP00000101509.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M9P7R9 Q6P0J3	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000190590.1	sp8b-204	1704	437aa	ENSDARP00000156612.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M9P7R9 Q6P0J3	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000139357.2	sp8b-203	875	248aa	ENSDARP00000112586.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 1,765 bps, Translation length: 455 residues

Version

ENSDART00000079201.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

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Transcript: ENSDART00000079201.6 sp8b-201

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Transcript: ENSDART00000079201.6 sp8b-201

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