Transcript: ENSDART00000079159.6 hdac9b-202

Description

histone deacetylase 9b [Source:ZFIN;Acc:ZDB-GENE-040109-7]

Gene Synonyms

hdac9

Location

Chromosome 16: 19,842,534-19,890,366 reverse strand.

About this transcript

This transcript has 11 exons, is annotated with 20 domains and features, is associated with 968 variant alleles and maps to 258 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000056642.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000079159.6	hdac9b-202	2272	612aa	ENSDARP00000073615.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000079155.6	hdac9b-201	5104	582aa	ENSDARP00000073611.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000147161.2	hdac9b-206	825	266aa	ENSDARP00000117125.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000145207.2	hdac9b-205	559	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-
ENSDART00000139027.2	hdac9b-204	287	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-
ENSDART00000103586.6	hdac9b-203	3778	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 2,272 bps, Translation length: 612 residues

Version

ENSDART00000079159.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

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Transcript: ENSDART00000079159.6 hdac9b-202

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Transcript: ENSDART00000079159.6 hdac9b-202

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