Transcript: ENSDART00000079001.5 frg1-201

Description

FSHD region 1 [Source:ZFIN;Acc:ZDB-GENE-050417-324]

Gene Synonyms

zgc:112426

Location

Chromosome 1: 16,675,264-16,688,965 reverse strand.

About this transcript

This transcript has 10 exons, is annotated with 10 domains and features, is associated with 675 variant alleles and maps to 83 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000056504.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000178599.2	frg1-205	2707	255aa	ENSDARP00000143283.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q566W5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000079001.5	frg1-201	1154	255aa	ENSDARP00000073458.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q566W5	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000159038.2	frg1-203	426	71aa	ENSDARP00000131976.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000162729.2	frg1-204	816	144aa	ENSDARP00000136721.1	Nonsense mediated decay	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000158166.2	frg1-202	881	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 1,154 bps, Translation length: 255 residues

Version

ENSDART00000079001.5

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000079001.5 frg1-201

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Transcript: ENSDART00000079001.5 frg1-201

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