Transcript: ENSDART00000078975.4 trnau1apb-201

Description

tRNA selenocysteine 1 associated protein 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2386]

Gene Synonyms

secp43, trnau1ap, trnau1apl, trspap1, wu:fa56b07, wu:fc12c07, wu:fc69f09, zgc:113964, zgc:77884

Location

Chromosome 2: 24,310,635-24,317,240 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 19 domains and features, is associated with 85 variant alleles and maps to 148 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000056475.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000078975.4	trnau1apb-201	1723	316aa	ENSDARP00000073432.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QXG2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000137891.3	trnau1apb-204	802	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000147008.3	trnau1apb-209	755	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000131393.3	trnau1apb-202	692	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000143416.3	trnau1apb-206	2410	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000155677.3	trnau1apb-210	818	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000138230.2	trnau1apb-205	801	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000146021.2	trnau1apb-207	748	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000134627.2	trnau1apb-203	676	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000146170.3	trnau1apb-208	542	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,723 bps, Translation length: 316 residues

Version

ENSDART00000078975.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

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Transcript: ENSDART00000078975.4 trnau1apb-201

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Transcript: ENSDART00000078975.4 trnau1apb-201

Summary

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