Transcript: ENSDART00000078823.9 PTPN4-201

Description

protein tyrosine phosphatase non-receptor type 4a [Source:ZFIN;Acc:ZDB-GENE-030616-449]

Location

Chromosome 9: 28,940,685-28,990,649 reverse strand.

About this transcript

This transcript has 25 exons, is annotated with 47 domains and features, is associated with 747 variant alleles and maps to 329 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000000631.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000000670.9	PTPN4-203	6112	929aa	ENSDARP00000000854.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000078823.9	PTPN4-201	4606	882aa	ENSDARP00000073283.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000188836.1	PTPN4-205	2842	928aa	ENSDARP00000152667.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000183391.1	PTPN4-204	2779	921aa	ENSDARP00000152804.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8JFS7	-
ENSDART00000151941.2	PTPN4-202	393	46aa	ENSDARP00000126342.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 25, Coding exons: 25, Transcript length: 4,606 bps, Translation length: 882 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000078823.9

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000078823.9 PTPN4-201

Summary

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Transcript: ENSDART00000078823.9 PTPN4-201

Summary

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