Transcript: ENSDART00000078694.4 tmem179ba-201

Description

transmembrane protein 179Ba [Source:ZFIN;Acc:ZDB-GENE-050522-510]

Gene Synonyms

im:6903984, tmem179b, zgc:110591

Location

About this transcript

This transcript has 5 exons, is annotated with 19 domains and features, is associated with 241 variant alleles and maps to 173 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000078694.4	tmem179ba-201	1918	219aa	ENSDARP00000073155.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7T392	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000144180.2	tmem179ba-203	927	106aa	ENSDARP00000114507.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000140102.2	tmem179ba-202	727	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 1,918 bps, Translation length: 219 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q7T392

Version

ENSDART00000078694.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.