Transcript: ENSDART00000078140.5 VPS26A-201

Description

VPS26, retromer complex component A [Source:ZFIN;Acc:ZDB-GENE-040426-1108]

Gene Synonyms

vps26, wu:fc67e06, zgc:56673

Location

About this transcript

This transcript has 9 exons, is annotated with 6 domains and features, is associated with 298 variant alleles and maps to 165 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000078140.5	VPS26A-201	2375	327aa	ENSDARP00000072602.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6TNP8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000136621.2	VPS26A-203	514	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000134637.2	VPS26A-202	488	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 2,375 bps, Translation length: 327 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6TNP8

Version

ENSDART00000078140.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.