Transcript: ENSDART00000077657.5 CAPN1-202

Description

calpain 1 [Source:HGNC Symbol;Acc:HGNC:1476]

Location

About this transcript

This transcript has 21 exons, is annotated with 32 domains and features, is associated with 939 variant alleles and maps to 167 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000077657.5	CAPN1-202	2115	704aa	ENSDARP00000072123.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QFN0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000191284.1	CAPN1-206	2082	693aa	ENSDARP00000152398.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000178229.2	CAPN1-205	2046	681aa	ENSDARP00000143925.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000186153.1	CAPN1-204	1995	664aa	ENSDARP00000146759.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000132215.2	CAPN1-203	490	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000132600.2	CAPN1-201	391	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 21, Coding exons: 21, Transcript length: 2,115 bps, Translation length: 704 residues

Version

ENSDART00000077657.5

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.