Transcript: ENSDART00000076739.6 nhsl1a-201

Description

NHS-like 1a [Source:ZFIN;Acc:ZDB-GENE-050411-25]

Gene Synonyms

im:7139028

Location

Chromosome 17: 30,545,895-30,591,223 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 42 domains and features, is associated with 1557 variant alleles and maps to 167 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000054537.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000193728.1	nhsl1a-206	5664	1579aa	ENSDARP00000151676.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000076739.6	nhsl1a-201	6727	1535aa	ENSDARP00000071210.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
ENSDART00000168051.2	nhsl1a-205	5220	1431aa	ENSDARP00000132391.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000154385.2	nhsl1a-202	705	235aa	ENSDARP00000128598.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000156500.2	nhsl1a-204	528	35aa	ENSDARP00000128154.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000154419.2	nhsl1a-203	671	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 6,727 bps, Translation length: 1,535 residues

Version

ENSDART00000076739.6

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000076739.6 nhsl1a-201

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Transcript: ENSDART00000076739.6 nhsl1a-201

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