Transcript: ENSDART00000074384.5 stx4-201

Description

syntaxin 4 [Source:ZFIN;Acc:ZDB-GENE-030131-2455]

Gene Synonyms

si:dkey-220f10.3, wu:fc08c10, zgc:56272

Location

About this transcript

This transcript has 11 exons, is annotated with 23 domains and features, is associated with 773 variant alleles and maps to 159 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000074384.5	stx4-201	2055	297aa	ENSDARP00000068873.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7ZV18	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000190179.1	stx4-202	4413	298aa	ENSDARP00000154837.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 2,055 bps, Translation length: 297 residues

Version

ENSDART00000074384.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.