Transcript: ENSDART00000074166.5 hnf1a-202

Description

HNF1 homeobox a [Source:ZFIN;Acc:ZDB-GENE-021206-12]

Gene Synonyms

af244934-22s, hnf1-a, tcf1, xx:af244934-22s

Location

About this transcript

This transcript has 9 exons, is associated with 484 variant alleles and maps to 99 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000018862.9	hnf1a-201	2961	560aa	ENSDARP00000006784.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F2Z4S1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000074166.5	hnf1a-202	1567	455aa	ENSDARP00000068655.4	Nonsense mediated decay	Q4L1M9	-

Summary

Statistics

Exons: 9, Coding exons: 8, Transcript length: 1,567 bps, Translation length: 455 residues

Version

ENSDART00000074166.5

Type

Nonsense mediated decay

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.