Transcript: ENSDART00000073527.5 spty2d1-202

Description

SPT2 chromatin protein domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-050522-212]

Gene Synonyms

wu:fb01d08, zgc:111826

Location

Chromosome 25: 24,237,449-24,248,000 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 27 domains and features, is associated with 139 variant alleles and maps to 210 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000033889.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000073527.5	spty2d1-202	2876	629aa	ENSDARP00000068017.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M6YWI0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000046349.8	spty2d1-201	6717	632aa	ENSDARP00000046348.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R3H5	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000132790.4	spty2d1-203	760	126aa	ENSDARP00000119198.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000151868.2	spty2d1-204	866	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 2,876 bps, Translation length: 629 residues

Version

ENSDART00000073527.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

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Transcript: ENSDART00000073527.5 spty2d1-202

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Transcript: ENSDART00000073527.5 spty2d1-202

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