Transcript: ENSDART00000067478.7 pkp3a-201

Description

plakophilin 3a [Source:ZFIN;Acc:ZDB-GENE-060512-114]

Gene Synonyms

pkp3, wu:fa97f09, wu:fk69a12, zgc:136656

Location

Chromosome 25: 22,176,439-22,191,733 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 6 domains and features, is associated with 8 variant alleles and maps to 79 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000051861.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000123211.3	pkp3a-202	3929	869aa	ENSDARP00000106964.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q8J9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000191181.1	pkp3a-204	3111	869aa	ENSDARP00000145683.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q8J9	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000067478.7	pkp3a-201	1017	252aa	ENSDARP00000067477.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000139110.2	pkp3a-203	394	93aa	ENSDARP00000114409.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 1,017 bps, Translation length: 252 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000067478.7

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000067478.7 pkp3a-201

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Transcript: ENSDART00000067478.7 pkp3a-201

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