Transcript: ENSDART00000067138.5 hic1l-201

Description

hypermethylated in cancer 1 like [Source:ZFIN;Acc:ZDB-GENE-030620-1]

Gene Synonyms

etID142640.25, hic1, hzp1, wu:fa03g10, zfHIC1a, zgc:153128

Location

About this transcript

This transcript has 2 exons, is annotated with 32 domains and features, is associated with 361 variant alleles and maps to 196 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000067138.5	hic1l-201	1918	454aa	ENSDARP00000067137.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A9JT69	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000185770.1	hic1l-203	1387	454aa	ENSDARP00000155608.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A9JT69	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000150636.2	hic1l-202	685	178aa	ENSDARP00000125489.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 1,918 bps, Translation length: 454 residues

Version

ENSDART00000067138.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.