Transcript: ENSDART00000064215.5 cops4-201

Description

COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis) [Source:NCBI gene;Acc:325592]

Gene Synonyms

fc90c08, wu:fc90c08, zgc:77137

Location

About this transcript

This transcript has 10 exons, is annotated with 12 domains and features, is associated with 196 variant alleles and maps to 245 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000064215.5	cops4-201	1789	406aa	ENSDARP00000064214.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6P0H6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000193067.1	cops4-202	5900	407aa	ENSDARP00000153791.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QL66	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 1,789 bps, Translation length: 406 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6P0H6

Version

ENSDART00000064215.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.