Transcript: ENSDART00000063127.7 crygs1-201

Description

crystallin, gamma S1 [Source:ZFIN;Acc:ZDB-GENE-050223-4]

Gene Synonyms

gammaSa-crystallin, zgc:136658

Location

Chromosome 22: 11,710,514-11,714,106 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 17 domains and features, is associated with 190 variant alleles and maps to 177 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000042992.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000145265.2	crygs1-202	710	178aa	ENSDARP00000114781.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QE97	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000183743.1	crygs1-203	1085	173aa	ENSDARP00000155436.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000063127.7	crygs1-201	703	174aa	ENSDARP00000063126.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5XTP0	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 703 bps, Translation length: 174 residues

Version

ENSDART00000063127.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Upcoming Ensembl Platform Transition

Transcript: ENSDART00000063127.7 crygs1-201

Summary

About Us

Get help

Our sister sites

Follow us

Upcoming Ensembl Platform Transition

Favourite species

All species

Recent locations

Transcript: ENSDART00000063127.7 crygs1-201

Summary

About Us

Get help

Our sister sites

Follow us