Transcript: ENSDART00000061723.5 tmem198a-201

Description

transmembrane protein 198a [Source:ZFIN;Acc:ZDB-GENE-070912-716]

Gene Synonyms

si:rp71-68g1.6

Location

About this transcript

This transcript has 2 exons, is associated with 1053 variant alleles and maps to 53 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000125824.4	tmem198a-203	1710	383aa	ENSDARP00000104886.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RBN9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000122526.4	tmem198a-202	1287	275aa	ENSDARP00000109259.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7EZQ2	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000061723.5	tmem198a-201	800	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 800 bps,

Version

ENSDART00000061723.5

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.