Transcript: ENSDART00000060938.8 snx9b-201

Description

sorting nexin 9b [Source:ZFIN;Acc:ZDB-GENE-031118-50]

Gene Synonyms

si:dkeyp-70e6.2, snx9l, wu:fj22c06, wu:fj94b09, wu:fk76d01

Location

About this transcript

This transcript has 20 exons, is associated with 2238 variant alleles and maps to 186 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000060982.6	snx9b-202	2799	581aa	ENSDARP00000060981.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5SPP2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000060938.8	snx9b-201	2965	253aa	ENSDARP00000060937.6	Nonsense mediated decay	Q5SPP1	-
ENSDART00000153078.2	snx9b-204	494	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000152867.2	snx9b-203	389	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 20, Coding exons: 9, Transcript length: 2,965 bps, Translation length: 253 residues

Version

ENSDART00000060938.8

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.