Transcript: ENSDART00000060030.7 zgc:101731-202

Description

zgc:101731 [Source:ZFIN;Acc:ZDB-GENE-040912-57]

Gene Synonyms

fj55h11, wu:fj55h11

Location

Chromosome 15: 29,123,046-29,138,108 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 18 domains and features, is associated with 331 variant alleles and maps to 286 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000040965.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000060030.7	zgc:101731-202	1124	209aa	ENSDARP00000060029.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q4V9B6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000133988.3	zgc:101731-204	929	209aa	ENSDARP00000117921.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q4V9B6	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000060025.6	zgc:101731-201	1155	99aa	ENSDARP00000124630.1	Nonsense mediated decay	-	-
ENSDART00000105222.4	zgc:101731-203	1565	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000143491.3	zgc:101731-205	695	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 8, Coding exons: 7, Transcript length: 1,124 bps, Translation length: 209 residues

Version

ENSDART00000060030.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

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Transcript: ENSDART00000060030.7 zgc:101731-202

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Transcript: ENSDART00000060030.7 zgc:101731-202

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