Transcript: ENSDART00000059882.5 shoc2-201

Description

SHOC2 leucine rich repeat scaffold protein [Source:ZFIN;Acc:ZDB-GENE-050208-523]

Gene Synonyms

si:ch211-159c12.3, si:ch211-197i12.3, zgc:152956

Location

About this transcript

This transcript has 9 exons, is annotated with 58 domains and features, is associated with 736 variant alleles and maps to 164 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000059882.5	shoc2-201	2133	561aa	ENSDARP00000059881.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1L8Y7-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 9, Coding exons: 8, Transcript length: 2,133 bps, Translation length: 561 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q1L8Y7

Version

ENSDART00000059882.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.