Transcript: ENSDART00000058892.7 slc38a11-201

Description

solute carrier family 38 member 11 [Source:NCBI gene;Acc:550337]

Gene Synonyms

zgc:110221

Location

Chromosome 9: 50,001,746-50,032,969 forward strand.

About this transcript

This transcript has 13 exons, is annotated with 18 domains and features, is associated with 22 variant alleles and maps to 49 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000040257.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000058892.7	slc38a11-201	1572	462aa	ENSDARP00000058891.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0H2UKD9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000175587.2	slc38a11-205	1347	448aa	ENSDARP00000144230.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0H2UKD9 A8KBL5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000165451.2	slc38a11-203	775	145aa	ENSDARP00000136076.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IP26	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000164409.2	slc38a11-202	691	53aa	ENSDARP00000137592.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IRV8	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000166509.2	slc38a11-204	484	54aa	ENSDARP00000130506.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IC96	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 13, Coding exons: 12, Transcript length: 1,572 bps, Translation length: 462 residues

Version

ENSDART00000058892.7

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000058892.7 slc38a11-201

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Transcript: ENSDART00000058892.7 slc38a11-201

Summary

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