Transcript: ENSDART00000058611.7 scn1ba-201

Description

sodium channel, voltage-gated, type I, beta a [Source:ZFIN;Acc:ZDB-GENE-060503-604]

Gene Synonyms

scn1b, si:ch211-265p12.1

Location

About this transcript

This transcript has 5 exons, is annotated with 19 domains and features, is associated with 627 variant alleles and maps to 122 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000084631.5	scn1ba-202	1446	221aa	ENSDARP00000079066.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q06W32	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000058611.7	scn1ba-201	1414	209aa	ENSDARP00000058610.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q06W35	-
ENSDART00000084639.7	scn1ba-203	1051	200aa	ENSDARP00000123713.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000161278.2	scn1ba-205	321	106aa	ENSDARP00000134972.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000131491.2	scn1ba-204	598	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 1,414 bps, Translation length: 209 residues

Version

ENSDART00000058611.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.