Transcript: ENSDART00000057123.8 nr5a5-201

Description

nuclear receptor subfamily 5, group A, member 5 [Source:ZFIN;Acc:ZDB-GENE-030131-4652]

Gene Synonyms

fd46g06, ff1c, wu:fd46g06, zgc:111842, zgc:153866

Location

About this transcript

This transcript has 7 exons, is annotated with 29 domains and features, is associated with 342 variant alleles and maps to 168 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000125515.3	nr5a5-202	1748	537aa	ENSDARP00000105488.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B3DKN2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000057123.8	nr5a5-201	2049	511aa	ENSDARP00000057122.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QKV6	-
ENSDART00000143096.2	nr5a5-203	765	213aa	ENSDARP00000113112.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000148131.2	nr5a5-204	758	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 2,049 bps, Translation length: 511 residues

Version

ENSDART00000057123.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.