Transcript: ENSDART00000056935.4 trappc1-201

Description

trafficking protein particle complex 1 [Source:ZFIN;Acc:ZDB-GENE-040718-242]

Gene Synonyms

zgc:100969

Location

About this transcript

This transcript has 5 exons, is annotated with 8 domains and features, is associated with 181 variant alleles and maps to 133 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000056935.4	trappc1-201	633	145aa	ENSDARP00000056934.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QJL7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000139088.3	trappc1-202	622	145aa	ENSDARP00000121929.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QJL7	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000139547.3	trappc1-203	661	39aa	ENSDARP00000115891.1	Nonsense mediated decay	E9QJ45	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 633 bps, Translation length: 145 residues

Version

ENSDART00000056935.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.