Transcript: ENSDART00000055590.6 sp100.4-201

Description

SP110 nuclear antigen, tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-050417-474]

Gene Synonyms

zgc:113411, zgc:173656

Location

Chromosome 3: 24,641,489-24,649,893 forward strand.

About this transcript

This transcript has 13 exons, is annotated with 27 domains and features, is associated with 4 variant alleles and maps to 202 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000038133.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000055590.6	sp100.4-201	1810	408aa	ENSDARP00000055589.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QT05	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000186635.1	sp100.4-205	1744	386aa	ENSDARP00000152869.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QIP3	-
ENSDART00000126230.3	sp100.4-203	1691	408aa	ENSDARP00000110770.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QT05	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000123994.4	sp100.4-202	477	26aa	ENSDARP00000111914.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000148414.2	sp100.4-204	994	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 1,810 bps, Translation length: 408 residues

Version

ENSDART00000055590.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

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Transcript: ENSDART00000055590.6 sp100.4-201

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Transcript: ENSDART00000055590.6 sp100.4-201

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