Transcript: ENSDART00000055511.4 ergic3-202

Description

ERGIC and golgi 3 [Source:ZFIN;Acc:ZDB-GENE-040426-795]

Gene Synonyms

sdbcag84, zgc:113959, zgc:55762

Location

About this transcript

This transcript has 14 exons, is annotated with 12 domains and features, is associated with 475 variant alleles and maps to 205 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000055511.4	ergic3-202	1987	388aa	ENSDARP00000055510.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000055502.6	ergic3-201	2018	383aa	ENSDARP00000055501.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q803I2-1	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

Summary

Statistics

Exons: 14, Coding exons: 14, Transcript length: 1,987 bps, Translation length: 388 residues

Version

ENSDART00000055511.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.